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I receive the following error message when when I try to run TEdenovo on my assembly
```
Fatal error: Exit code 1 ()
cat: /home/jeremy/galaxy/tools/Pipeline/REPET/WORK/genome_Blaster_Grouper_Map/…
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Hi
as you already know CutAdapt can detect and trim adapter/barcodes in the middle of a read (anchored 3` or 5`). we are working with data from Oxford nanopre technology and we have lots of reads …
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Dear all,
We have been going through the SAM specification with a fine comb, and
found a few issues.
The main issue is that there seems to be a confusion about ‘read’ and
‘segment’ at various plac…
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# Issue Report
## Please describe the issue:
Hey there,
I am currently working on some analyses in which I am particularly interested in the basecalling qscores (qs:f). However, I have a problem …
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Hi, I'm running Breseq to compare two closely related lactobacillus strains and I am getting +10K> mutations.
During the run, I get an error saying that the strains seem much different (above 1% dif…
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Hi, thanks for your continued work on Rcorrector. I am having an issue using the tool on my FASTQ sample. At first I thought it was potentially due to multiple threads/processes writing to the output …
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Hi,
I am trying to run a base call job on our HPC. However, when I requested 4 gpu, the job finished in the same amount of time as when I requested 1 gpu. Could someone help me figure out what is wr…
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# Feature being added - Filtering!
Filter reads and alignments based on a flexible "mini language" specified in the TOML.
Would go into config TOML under the respective place for the filtering? I.e…
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Hello, I am a BI graduate student in South Korea dealing with ONT long-read sequencing data for the first time.
I am working on a project to align and analyze targeted long-read sqeuencing data, and…
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Hello,
I received the following error output when running DNAscent detect:
```DNAscent detect -b Tmet_079_pass_mapped_R_index_filt_header.sorted.bam -r /hg38.chrXYM.fa -i Tmet_079_reads_pass_R.…