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HI,
I have three data in my seurat object
object@assays$RNA@counts
object@assays$RNA@data
object@assays$RNA@scale.data
```
sceasy::convertFormat(object, from="seurat", to="anndata",
…
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Hello
I call superstr in the following way
`superstr-outliers.py --pathogenic -i results/superstr/multiparse/fame_rna --bootstrapCI -is -m results/superstr/manifests/fame_rna.tsv --min_len 30 --…
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Dear authors
Could you give me a small example of how I should define the eID for single cell RNA-seq experiments.
I have the cell Barcode and UMI in the fastq header.
Thank you very much fo…
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I don't think this episode introduces very much new content. An option would be to separate out the new content (e.g. "Metrics and Reports") and set up the episode as an extended exercise for learners…
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cas : https://app.datasubvention.beta.gouv.fr/search/W011000016
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Hi All,
We have performed STAR and STAR-Fusion on your RNA-Seq datasets and encountered conflicting results, particularly regarding the read counts. Our results show significantly more junction rea…
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![image](https://github.com/walaj/VariantBam/assets/54714639/b6499d52-e603-4051-a6ff-f7812e43a1bc)
i want to exclude N >1000 reads for RNA bam files, for example, the reads "9ae8a1cd-1a71-40d1-ab06-…
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```bash
#!/bin/bash
script=/mnt/users/fabig/cluster_pipelines/RNAseq-analysis/RNA_map.sh
fdir=/mnt/SeqData1/bovine/ullevaal_cow_rna_nov_2016/sample_pool
genome=/mnt/users/tikn/seqdata1/bovine/…
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- **acted_on_behalf_of**
- **ended_at_time**
- **has_maximum_numeric_value**
- **has_minimum_numeric_value**
- **has_numeric_value**
- **has_raw_value**
- **has_unit**
- **latitude**
- **longi…
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Hi,
I was following the tutorial to install Celescope, but I had an issue with the mkref command:
(celescope) root@PT-DR-GHIROLDI:/home/aghiroldi/hs_ensemble_99# celescope rna mkref \
> --geno…