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This is regarding a de novo genome of a plant that was assembled lately. I used AGAT's feature extraction tool, to get the gene models predicted by AUGUSTUS. The repeat-masked genome is of size 2.6gb,…
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I ran GAG on a Augustus output of E.Coli and only find genes in the GAG output. Both transcripts and CDS (present in the input) are not transferred to genome.mrna.fasta and genome.proteins.fasta.
T…
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"triúr deirfiúracha" gets flagged with "The singular form is required here". It appears inconsistent, since "triúr ban" is accepted without complaint.
 by AGAT using Galaxy. I sorted the GTF file using IGV tools. Then, I tried to …
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Hello.
Some GFF3 files use the "Derives_from" field instead of the "Parent" field to establish a parent-child relationship (see an example from miRBase: ftp://mirbase.org/pub/mirbase/CURRENT/genome…
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Greetings, I'm trying to make use of MCScanX_h, i've prepared the necessaries files following the manual yet my data neither example data is working.
My gff with 5 species gff is edited follwing t…
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| Another GFF Analysis Toolkit (AGAT) - Version: v1.4.0 |
| https://github.com/NBISweden/AGAT…
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Hi developers!!
## Background
I am using Alevin to align the P.Falciparum single cell dataset. For this sample we got a total of 27% of reads aligning using CellRanger and I am expecting this number…
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Hello,
I am trying to wrap my head around how best to merge these annotations. We have information from EMapper and Interproscan we would like to merge with he TSEBRA output. I am pasting below an …
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**Describe the bug**
When I ran the scripts `agat_sp_add_start_and_stop.pl`, it told that MSG: Each line of the file must be less than 65,536 characters. Line 28 is 85016 chars.
**General (please …