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## Anvio installation
## anvi'o 8
Keep the header of this section, but replace this text with the output of this command in your terminal:
```
anvi-self-test --version
```
## System …
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## Short description of the problem
I use anvi-gen-contigs-database -f "${contigs_fa}" -o "${contigsdb}" -n "VAMB_binning_${dup}" -T "${anvio_threads}" >> The "${log}" 2>&1 code runs, but after 2 day…
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## The need
anvi'o uses DIAMOND in many cool functionalities, and offers selection of fast and sensitive modes. According to the recent publication on the updated version of DIAMOND (https://www.na…
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First off, Wow! well done @gamcil, well done. I've went over so many tools and packages and what not lately to try and generate such figures and clinker is by far the easiest and most visually appeali…
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Hello BinSanity developers and community,
I am trying to bin contigs with BinSanity using anvi'o v6.2 and got error which seems like I have a memory issue as shown below. I ran a command `anvi-clus…
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@FlorianTrigodet and I have noticed several common issues emerging from recent Discord questions. These are not really bugs, but quirks of the anvi'o ecosystem that are not obvious to beginners. Many …
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Hi there,
after dealing with the Phylosift issue (#28), I was able to run the test data to completion without problem. Now I'm getting an error when DESMAN tries to estimate the strain count, not s…
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In addition to artifacts and programs, the anvi'o docs now supports workflows following the PR #1977.
Adding a new workflow is quite straightforward, and every file that needs to be edited to add a…
meren updated
11 months ago
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Reply with learning objectives (and challenges to test them, if possible).
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## Short description of the problem
I can't install anvio-8 because of an error when building wheels for anvio and connection-pool.
## System info
System version: Ubuntu 22.04.4 LTS
I tried …