-
Hi everyone,
I’ve been using the `EPA-NG` module along with the [SBDI-GTDB database](https://figshare.scilifelab.se/articles/dataset/SBDI_Sativa_curated_16S_GTDB_database/14869077) to perform phyloge…
-
Hi , I had configured the NCBI STAT tool as per the steps mentioned in https://www.ncbi.nlm.nih.gov/sra/docs/sra-taxonomy-analysis-tool/ and was able to successfully run the input file given in Examp…
-
Hi,
I have a problem with
kraken2-build --download-library bacteria --db /home/pracownik/KRAKEN_DB/Bacteria
command. I am getting an error:
rsync_from_ncbi.pl: unexpected FTP path (new se…
-
The following is my code
`kraken2-build --download-library bacteria --db bacteria`
`kraken2-build --download-taxonomy --db bacteria`
`kraken2-build --download-library plant --db bacteria`
`krake…
-
Dear metaMDBG team,
I am wondering the difference between rust-mdbg and metaMDBG is the same with Flye and metaFlye. Because essentially, when there are difference species in the sample, especially…
-
Higher Risk of Stroke Is Correlated With Increased Opportunistic Pathogen Load and Reduced Levels of Butyrate-Producing Bacteria in the Gut - Xiuli Zeng – Front Cell Infect Microbiol.
https://www.f…
-
Hi Thierry,
I’m a university student at UBC, Vancouver working on the dry lab of UBC’s undegraduate [iGEM](https://igem.org/Main_Page) team. Our project this year aims to use tumor-colonising salmone…
-
Hello,
When I run MetaPalette on a even very small dummy dataset with precompiled Bacteria db, it ends with a "Segmentation fault (core dumped)". I tried both Docker version and a local compilation…
-
Hi,
I'm trying to use my stratified data and see which bacteria produces which GBM/GMM. However when I run the following code I receive this error:
GBMs
-
Can the NanoCaller be used to call reads from bacteria samples?
Also in your readme file there is an argument for selecting contig -chrom . If I want to call snps on the whole genome what argument…