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Hello,
Working on a separate ticket, when I commit, I see changes in PRO labels for a few terms:
-intersection_of: has_input PR:000010444 ! mitogen-activated protein kinase kinase kinase
+inter…
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Hi,
Would it be possible to add the ability to step to the previous/next variant in a VCF track? This follows on from the 'show PASS' ticket I submitted last week in that it should work based on the…
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Hi,
I am kind of new. I installed cat on slurm as per github instructions and added all dependencies either through anaconda or manually installed and provided the path.
The code I used for test r…
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I used spaln to annotated a gene structure in de-nove assembly using a homologous protein, but spaln report error (Segmentation fault (core dumped)). The command as follow
spaln -Q3 -O0 -KP -C1 -M100…
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Hi SunPeng
What is the best approach when the ancestor is unknown and there is no information about ancestor of testing plant species?
Regards
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## Feature Request
Add HS1/T2T as a reference genome
- [ ] add to biowulf
- [ ] add to frce
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e.g. the polar auxin transport pathway in rice has few reactions that are not necessarily mediated by involvement of gene product. such as the direct IAA transport (export and import)--a diffusion re…
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In attempt to incorporate external annotation, I ran gffcompare with one of the consensus output from CAT.
gffcompare warned that there was a number of redundant features. I pulled one of those ex…
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My suggested heuristic for generating the paralogs had a small flaw. It would miss the proteins which had duplicated, and were not species specific, but had been lost from S, cerevisiae.
Thes…
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All genes with paralogs