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### Description of the bug
Hello,
I'm reaching out regarding an intermittent error I've been encountering in my workflow. Specifically, I've observed that on occasion, a particular sample runs smo…
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Can you create a dendrogram from the dist results?
Also, could you recommend parameters for large fungal genome comparison?
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Hi @XiaomingXu1995
First, I'd like to congratulate you for RabbitTClust. I spent weeks trying to find a clustering algorithm that worked in the scale I needed and RabbitTClust solved all of my pro…
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I Found that LithoGenie can predict more cyc2 gene than FeGenie. Why? Which one I can believe? Moreover, I found the results of FeGenie were very unstable. I can predict a cyc2_cluster3 from a genome …
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This issue can serve as a placeholder for use cases for sourmash/MinHash more generally.
Stuff we already have implemented:
* basic MinHash comparisons etc
* metagenome taxonomy breakdown
* st…
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Dear Dr. Hajk-Georg Drost
Recently, I used one of your programs named "LTRpred".
I keep getting this error in the Join solo LTR Copy Number Estimation table after Finished LTR CNV estimation…
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Dear Ryan,
thanks for developing Bacsort. I'm trying to run it on a bunch of genomes from isolates and cluster_genera.py fails every time, but I can't interpret the error. Do you have any ideas or di…
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### Samples
- **SampleID**: _Abundance i wanted to generate_...
- **Size(Gb)**: Amount of bases generated
- **Tot.Reads**: Number of + and - reads generated summed
- **host.reads**: Number of + an…
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Got this error message while running ViralClust with SARS-CoV-2 alpha genomes (152,307 non-redundant seqs).
`Traceback (most recent call last):
File "/home/nu76fet/programs/viralclust/bin/hdbsca…
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Hi Ben,
Apologies for the multiple questions. I ran singlem separately on my metagenome reads and my MAGs. I then separated each marker and clustered them using the default species-level identity. …