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Got this error message while running ViralClust with SARS-CoV-2 alpha genomes (152,307 non-redundant seqs).
`Traceback (most recent call last):
File "/home/nu76fet/programs/viralclust/bin/hdbsca…
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Hello dear author,
I used this package for my scRNA-seq data analysis, now I wonder if I can use the function "BuildSNNGraph" on my DNA methylome data (data frame: genome_bin * cell_ID)? My purpose…
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I've been using linclust and it is extremely fast. I'm wondering if I can just use this in place of easy-cluster for all of my clustering tasks. Are there any caveats to doing this?
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Hi,
This is not an issue report, but I would like to share my workflow for visualizing FastANI results as I think it will be useful for other users.
### 1. Visualize all-vs-all ANI matrix
I …
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Hi!
I would like to use your tool with my own reference database.
I installed using option 2 after reading through #10
```
git clone https://github.com/liaoherui/StrainScan.git
cd StrainSc…
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### Here's the overview of the plan:
There are very few papers that look into synteny of non-bilaterians. The ones that have take a manual approach to synteny analysis, looking only at one or two 'ta…
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**Are you using the latest release?**
Yes, version 1.8.16 as installed per https://funannotate.readthedocs.io/en/latest/install.html via conda.
**Describe the bug**
Funannotate train generates a …
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## 12/05
- [ ] Select highly variable Chrom100K bins based on compartment score
- [ ] Analyze the identity of these bins (gene, genome annot enrich, etc.)
- [ ] Plot corr mat for each cell type, se…
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Dear all,
I have been having the following issue when installing panX. I followed the steps as in the site and used miniconda as indicated.
`Traceback (most recent call last):
File "./panX.py…