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There are quite a few duplicate positions for markers with differrent names in the raw file set FinalReport_54kV2_collection_ed1.ped and FinalReport_54kV2_collection_ed1.map.
Found these:
```
CH…
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Hello, I am running Lotus2 on merged paired end illumina reads and am coming up with a weird issue. I am able to go through read filtering then I get an error tha the SDM file is not empty, but when i…
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Hello I am just starting to experiment with the PyPiRet tools (at CDC).
Does the pipeline work with single ended/unpaired illumina data ?
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Hello,
I ran "!pip install git+https://github.com/Illumina/Cyrius.git" in a cell in my jupyter notebook and received the following output:
Collecting git+https://github.com/Illumina/Cyrius.git
…
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I use the following command to assembly my illumina data with nanopore, but there are a warning showing below.
My command:
nohup ~/tools/SPAdes-3.13.0-Linux/bin/metaspades.py -1 ~/data/seameta_ill…
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Hello,
I'm trying to understand the output for gRNA counts for periscope data applied to illumina sequenced libraries. I see gRNA counts for every ORF in my results and the counts are different per…
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### Description of the bug
Hello, I am running the test command to launch the pipeline on an HPC machine, but with version 2.6 I am having issues as it fails at the NFCORE_VIRALRECON:ILLUMINA:VARIANT…
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Does your package help with this type of data?
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Dear all,
we've been trying to use the checkqc container on quay.io that was created from the checkqc recipe and receive an error about interop not being installed properly:
```
File "/usr/loc…
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I' m very interested in your team' s project, but the data I had was seqenced by Illumina HiSeq2000 for per cell.
I read the pipline and found that the folder structure more similar to the smart-seq…