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### Name of the tool
MetaPhlAn
### Tool homepage
https://github.com/biobakery/MetaPhlAn
### Tool description
"MetaPhlAn is a computational tool for profiling the composition of microbial communit…
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@renzok
@genomewalker
Linda raised a good point during a call on 2015-04-17:
> Has anyone extracted archaeal markers from the metagenomic data?
It would seem odd if they weren't addressed at all…
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Dear GRiD Developers,
I'm getting the following error when I am running Grid Multiplex on the mice metagenomic data (from stool) using comprehensive GRiD database. However, I able to receive the ou…
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I'm working on a generalizable pipeline for metagenomics that has bacteria, archaea, eukaryotes, and viruses.
The `download_eggnog_data.py` script asks for taxonomy. Would I download each of these…
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Dear developers!
I am looking to test the KMA+CCMetagen pipeline for our metagenomic data, and would like to run some tests with the prebuilt indexes before I invest the time to build custom ones. …
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Hello, thanks for your development of this tool! I was curious of your thoughts on using it on meta-omic datasets which comprise genetic information (e.g. metatranscriptomics, gene-level metagenomics)…
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Hi @liuqianhn,
Can you tell me if nanomod is compatible with R10 chemistries? I am interested in de novo detection of modifications in metagenomic sequencing data from R10 runs, but it seems like …
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Dear Developer
As metagenomics data contains all microorganisms and also contamination from host. What if I want to use your tool to classify all of them?
**The document/index files you suppli…
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Hi Casey et al.!
Steve told me that you're doing a review.
We have published on using multilayer recurrent neural networks for metagenomic samples: http://ieeexplore.ieee.org/document/7219432/?arnu…
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hi sir;
kraken2 is a perfect tools for identify species in metagenomic data.
there are many WGBS reads from human WGBS project ，which want to identity Possible pathogen；
can krak…