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Can we limit all checks in Travis to non-obsolete reactions/compounds?
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We want to be able to load the RASTTk annotations to anvio to compare the annotations used in the model to what Michelle got from the pangenome.
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@cshenry , @janakagithub, @jplfaria , @samseaver. It may be a good time to get all the data we need for editing media into the media objects. Can we have the compound names
added? I think it make…
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Instinctively, I find myself pressing the 'tab' button when typing out the path for a reference. It occurred to me that it would be a useful feature, albeit a headache, to implement a shell-like expa…
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I'm finishing up an implementation of the REST API over the database service. The implementation works but it performs pretty poorly and really taxes the web-server. The issue is that the objects are …
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Hi. I am new to all this work. I used CarveMe for making a metabolic model from protein fasta file. I used the following code.
$ carve genome.faa --output model.xml, from the documentation.
The fast…
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To enhance the availability of the whole refineGEMs package I would suggest the following options:
- [ ] Task 1: #118
- [ ] Task 2: Provide refineGEMs also via conda
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Hi
I wonder if "Biomass_biomass" cpd29751 compound and "Biomass" cpd11416 compound are similar?
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So I'm really eager to get my new changes integrated in Model SEED, but the object update is an issue. I've got two possible solutions, that could both work quite well actually, but both require some …
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## Short description of the problem
KeyError: 'reaction_network_ko_annotations_hash' when running `anvi-reaction-network`
## anvi'o version
```
Anvi'o .......................................: …