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Hello,
It is a good idea to incorporate a script to produce variants from starting structures (aka. inpaiting). I was trying to run the script partial_noise_reconstruct.py but I got the following e…
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How can I get .ply corresponding to .pdb as provided in download dataset?
In other words, how does this work convert pdb to ply?
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### System Info
- `transformers` version: 4.37.2
- Platform: Linux-3.10.0-1160.59.1.el7.x86_64-x86_64-with-glibc2.10
- Python version: 3.8.0
- Huggingface_hub version: 0.24.6
- Safetensors vers…
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Thanks for providing the implementation of such wonderful work!
Can't wait to see the full training scripts as other Forkers do!
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Prerequisite: the TEM simulator is wrapped with CTF and noise, using the container TEM simulator.
Scope: generate 1k particles of the following datasets to be made available on ioSPI.
1. ribosom…
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Great Work! It seems that ModelAngelo organizes a training set with good quality. Do you have plans to release them? I think it's a great resources for the computational CryoEM community.
Qmi3 updated
2 months ago
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This example is data preprocessing from Epitope3D external test set "epitope3d_dataset_45_Blind_Test.csv"
Tutorials
Prerequisits: csv file of PDB ID in Data_processing directory (w/wo epitope l…
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I am trying to re-create those pre-processed data. I am encountering 2 problems for creating protein's gninatypes files.
1) Remove water and hydrogen from XXX_protein.pdb to generate XXX_nowat.pd…
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Thank you guys so much for conducting this novel study. I had a few questions about the data. I was able to get the warhead, linker, and E3 ligand data by downloading from PROTAC DB. However, they don…
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I get this error when trying to run prank rescore: "Dataset must contain 'protein' and 'prediction' columns!"
What is the format that the input needs to have?