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I'm intrigued by the choice made to mix p.value and scores for the phage prediction by contigs. Scores are related to a measure of some kind and p.values are related to the statitistical significanc…
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I was wondering if I could get some assistance with this. What does it mean? Am I writing the command incorrectly? Is there something additional that I need to download? I installed VirSorter using An…
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Hi there,
I am having some trouble with VIBRANT even though the test runs have worked like they're supposed to.
I began with 150 bp .fastq reads, paired-end and demultiplexed for each of my sam…
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Dear Simon,
I've been running VirSorter on the cyverse platform before, and now installed it on a server (CentOS Linux 7), as I'd like to use it for a larger number of samples. I followed the insta…
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* pharokka version 1.7.3
* Python version 3.9.16
* Operating System debian 11
### Description
Dear George,
i have an issue with mmseqs:
pharokka.py \
-i /home/yana/download/Escherichia_phag…
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I feel like as it is in the modpack currently, Alex's Mobs isn't living up to its full potential. I'm not sure why some mobs were disabled, whether it was for lag or for balance, but not having all th…
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Hey!
I am trying to run this in google colab and and the 2.1 code block gave me this issue
ValueError Traceback (most recent call last)
[](https://localhost:8080/#)…
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I have a Phamerator mysql database created following the BYU Phamerator instructions. How do I add this to phamdb? Thanks!
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I am wondering if Prodigal-GV, which incorporates alternative genetic codes tailored to viruses, could be a viable alternative to Prodigal in the Virify pipeline to enhance result accuracy. I am curio…
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Hi，Jessie
Thanks for your VirFinder job!
when I test with my single sequence follow your github instruction，it return
```r
Error in smooth.spline(lambda, pi0, df = smooth.df) :
missing or infi…