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@vguerracanedo mentioned during the meeting on 2016-05-16 that we should perhaps look into getting a speaker from the field and/or industry. The following is taken from an email she sent with more inf…
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Hi Frank,
Thank you for creating this streamlined tool for performing GWAS analysis. Regarding covariates, if I want to correct for e.g. age, sex and population structure, how can I do this? Can I …
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Hi, Wang @lepisorus,
I want to calculate the D statistic as you show in the script `Dstatistics/abba-baba.sh`
, but I'm confused about the Tripsacum.fa you use as the ancestral genome, since Trips…
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Dear Nick,
I'm trying to work out a model with complex admixtures starting with a simple one and adding nodes. My starting point was based on a D calculation that wasn't significant, using qpDstat.…
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Following discussion on Population type in https://github.com/cesaraustralia/Dispersal.jl/issues/70#issuecomment-737756996_
I start reviewing the possibilities, given quite big "Comment". There are…
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I'm a first time user of Admixtools2. I have been trying to create the f2 file using 'extract_f2' but no luck. Here are various command line combos I've tried, so far with no luck:
I entered:
pr…
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Like discussed in last night's GA4GH call, I'd like to propose opening up discussion on how to include ethnicity in phenopackets 2.0.
My impression from the discussion was that simple enumeration o…
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Aim for comparable Garki scenario using Co-transmission model and FPG model with comparable analysis of genetic feature
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The file `R/phasingImpute4.R` has the comment
`## impute for chrX PAR >> with an additional flag: --Xpar.`
However, the lines following it and running IMPUTE4 do not have that flag set, i.e.
…
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- **Name:** Zea Mays
- **Common name:** Maize/Corn
**Description:**
Have assembled working information and will go over it in the Grow the zoo hackhaton.