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Is the training source code available? We want to refer to your [article](https://doi.org/10.3390/ijms232314683) in our paper as a baseline for SARS-CoV-2, comparing our results (not out yet) with you…
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R190S is becoming very convergent with 31del lineages. There's at least 10 each separate emergences of this under LB.1 and KP.2.3, and many emerging under KP.3.1.1.
From branch 12 of https://gith…
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**Resources:**
- LOINC pre-released COVID-19 related terms:
https://loinc.org/sars-coronavirus-2/
- FDA EUA authorized IVD tests:
https://www.fda.gov/medical-devices/emergency-situations-medi…
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This recombinant seems quite interesting to me because appears, beyond having 22N+59S, to be a mini saltation branch (3/4 AA changes not inherited by donors , apparently).
It involves KS.1.1 and JN.…
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We have examples where there is a choice of two primers for the end of a given amplicon. Only one primer of the two primers has support from the reads.
Observed behaviour: Both primers are kept, in…
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# Design
In 2025, the multiple species roadmap requires the following policy changes:
1. There MUST be one `obs['organism_ontology_term_id']` per dataset, previously requested in [Handling of mu…
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**Describe the bug**
The findall regex either changed in newer versions of Python or this has always been incorrect:
https://github.com/CDPHE-bioinformatics/CDPHE-SARS-CoV-2/blob/f3b93dd3972b137…
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Title: A human monoclonal antibody blocking SARS-CoV-2 infection
### Please paste a link to the paper or a citation here: https://www.biorxiv.org/content/10.1101/2020.03.11.987958v1.full.pdf
…
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Title: The proximal origin of SARS-CoV-2
### Please paste a link to the paper or a citation here:
https://www.nature.com/articles/s41591-020-0820-9
### What is the paper's [DOI](https://l…
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1568
KP.2.2+A28468G(Orf9b:N62S)
GISAID query: A28468G,T21737C,A25359G
No. of seqs: 151(Canada 6 UK 6 Finland 5 France 65 Frenc…