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Dear fellows:
I update snakePipes2.5.3 to snakePipes2.5.4 by command `mamba update -n snakePipes.2.5.3 -c mpi-ie -c conda-forge -c bioconda --prune snakePipes`, and checked by `snakePipes version`-->…
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Hi Hervé @hpages
I want to construct the BSgenome of Axolotl genome for single-cell ATAC-seq analysis. I 've carefully read your comments in the URL: https://github.com/Bioconductor/BSgenome/issues/2…
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To support sc_seq, Magma needs to be able to construct one-to-many (collection) relationships within a single model. This would mimic the `reference_patient` (one-to-one, child) attribute in IPI, and …
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Hi staffs of scarf, I downloaded Cusanovich's 81K sc-ATAC-seq dataset using your fetch_dataset(),
but when I was importing the dataset, this happened:
``` python
reader = scarf.CrDirReader(temp_pat…
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Hi, thanks for developing this nice package! I'm following the [tutorial steps](https://docs.scvi-tools.org/en/stable/tutorials/notebooks/PeakVI.html) for PeakVI with scATAC-seq data, but using two …
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Hi,
Thanks a lot for this amazing tool,
I was trying to build my own sc-ATAC-seq browser and downloaded the already deployed data from https://cells.ucsc.edu/?ds=mouse-kidney-atac+atac to test it.
…
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Hi,
I have 8 10X multiome (scRNA+ATAC) samples (2 groups: stimulated; unstimulated). The analysis is based on the Seurat and Signac multiome and integration vignettes.
After cell annotation, I perf…
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@ambrosejcarr commented on [Thu Aug 13 2020](https://github.com/chanzuckerberg/corpora-data-portal/issues/524)
Appetite: ?
This question is limited to 10x scRNA/snRNA and Smart-Seq2-like assays.
S…
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#1 What are the changes required if using sc-RNA seq count data simulated using popular methods like splatter compared to real data?
#2 Methods to integrate different sc-RNA seq data sets?
#3 Change…
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# 生信爱好者周刊(第 47 期):RStudio 改名 Posit
这里记录每周值得分享的生信相关内容,周日发布。
本杂志开源(GitHub: [ShixiangWang/weekly](https://github.com/ShixiangWang/weekly)),欢迎提交 issue,投稿或推荐生信相关内容。
[「生信周刊讨论区(语雀)」](https://www.yuq…