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We need to migrate all the assembly and annotation data generated as part of Serratus to our data-lake in a structured way so as to allow for programmatic access. This is a proposed folder hierarchy t…
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Hello,
I would like to use Survirus to detect integration sites in human cancer cells from RNA-seq data.
I'am currently testing the tool on the sample L526401A for which viral integration site hav…
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Hi,
I turn on the "--prep-for-dramv" option to produce the files for DRAM-v annotation. Note that the input fasta file contains viral contigs obtained from different viral identification tools (inc…
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Hi,
I got the following error while testing viga using my own viral contigs:
```
...
Detected 8 ORFs in CONTIG_996.fna
Detected 12 ORFs in CONTIG_997.fna
Detected 8 ORFs in CONTIG_998.fna
…
housw updated
5 years ago
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Hi Bastiaan,
I had a large contig file with many host sequences, which I removed using bbtools sketch, followed by parsing in R to generate a contig fasta (using the package Biostrings).
I then …
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Hello Virsorter developers,
I tried Virsorter sample data with success. However, there is a problem when I add custom phage (--cp). The command was:
```
wrapper_phage_contigs_sorter_iPlant.pl -…
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hello!
I’m trying to input my virsorter2 results into anvio and I’m having some issues with the conversion script.
Here’s the error I am getting:
`./convert2anvio.sh
######################## Rea…
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Dear Virsorter2 team, thank you again for your awesome work ,but when I use a single sample to test using the following code
" virsorter run -i ~/testfile/FC03.contigs.fa -w ~/result/Virsorter2/tota…
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Hi,
I got this error during VirSorter2 run (environmental metagenomes contigs):
virsorter run -i sequences_cdhit_metagenomes.fasta -w VIRSORTERvers2 -j 4 all -d /home/nico/miniconda3/envs/virsorte…
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Hi,
I am using Arriba to analyze RNA fusions.
I downloaded public data from two different sources (A and B).
I could successfully get final tsv files from RNA sequencing data (Aligned.sortedByCo…