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The traceback:
```
Error in py_call_impl(callable, call_args$unnamed, call_args$named) :
FileNotFoundError: [Errno 2] No such file or directory: '/home/rstudio/workspace//data/SspArc0008_10x_c…
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Hi,
I was wondering how one might go about using bwa-mem2 as a library in the same way you can in the original bwa;
https://github.com/lh3/bwa/blob/master/example.c
or is there now another wa…
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Trying to analyse some SMART-SEQ3 data and can't manage to get past the mapping step. Any suggestions would be much appreciated. I've remade my index multiple times (`STAR --version` is giving 2.7.3a,…
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Hi,
When I try to use the path as an input, my command is
`cellphonedb method statistical_analysis /Users/tangsuiyue/Documents/Documents/Project/MUSE/Related_paper_data/cpdb`
But I got an Erro…
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## Background
Several collaborators have expressed interest in having treatment-level spherized (batch-corrected) profiles for all 30k compounds in the Bray et al. Cell Painting dataset. This would…
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**Describe the bug**
I ran dsb normalization with muon.prot.pp.dsb(), and I realized that the results for my data did not fully match with the results of the DSBNormalizeProtein() original implemen…
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I am writing to seek your help regarding an error I am encountering with your Souporcell pipeline. After singularity pull shub://wheaton5/souporcell, I get the souporcell_latest.sif file, but it coul…
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Hi, We're getting the below error, near the end of the pipeline.
Any idea what the issue is?
Thanks
```
You provided these parameters:
YAML file: RNAseq_4-17-23.yaml
zUMIs directory: /gpfs…
gevro updated
5 months ago
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Hello Alex,
First of all - thank you so much for developing STAR. I (like many others) find incredibly useful and easy to work with. Cool, too!
That said, I have been having trouble mapping some…
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Hello,
I have a question about the filtering steps are done by TRUST4? I read the paper, but wanted to know if there are more criteria for filtering the reads/cells, which are not shared in the pap…