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Hi all,
I recently used prokka to annotate a bacillus species. I noticed there were more CDS called by prokka than what NCBI estimates this organism should have. Prokka annotated 5050 CDS, whereas …
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Hi!
I'm testing GraphBin with my data and I'm unable to use it with a MEGAHIT graph.
```
2020-07-01 19:14:50,429 - INFO - Welcome to GraphBin: Refined Binning of Metagenomic Contigs using Assem…
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How are planning to integrate PROV with the NMDC schema?
Currently, we have a place to put PROV activities in the `activity set` slot. But, other questions follow:
1. Should biosample processin…
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Continue the discussion with @sofie8 from #258
> At the moment I was running atlas2 like this:
> qsub -l nodes=1:ppn=36 -l pmem=5gb -l walltime=72:00:00 -A myproject myjobscript.pbs
> With the f…
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Hello,
I am trying to use CAMISIM to simulate nanopore reads.
I am on the branch nanosim and I downloaded the NanoSim github here https://github.com/bcgsc/NanoSim.
Python command is python 2.7 an…
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@dehays @cmungall @scanon @hubin-keio
If I recall, Kitware needs the dataset settled by Friday 7/17. Can we prioritize what workflows we might be able to get to them? E.g.:
- readQC
- nucleoti…
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Hello,
I am performing a metagenome assembly with PacBio HiFi data and have run into a repeatable error. I am using canu 2.1 with:
`canu -d STD -p Zymo6331-STD -pacbio-hifi Zymo6331-STD.fastq genome…
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Hi,
I'm currently using Camisim for my research and it seems to work great for now.
I have a small question regarding the outputs: I have a set of genomes for which I want to simulate the coverage…
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Hi,
I got this error for half of the samples I ran through spades 3.14.0, it's toward the end of the run...
I'm attaching the log for one of the sample.
[spades.log](https://github.com/ablab/spades…
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Hi...
I am running SqueezeMeta and got an error at step 14
The whole error message was as follows
"Error running command: perl /home/anil/SqueezeMeta/bin/MaxBin/run_MaxBin.pl -thread 12 -contig …