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I wanted to check the number of FigFams for Lactobacillus brevis ATCC 367, so changed the PFS, which was already loaded with PLFams, to FigFams. The blue wheel turned around and around, and finally t…
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If we select a tax level from the protein family sorter, say Hydrogenthermaceae it shows there are 7 genomes
But if we go there, we see there are only 4 genomes
We can drill down to a real anoma…
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I am comparing 3 groups and I chose PLFams. When the page loaded (FINALLY loaded), some of the protein families do not have names:
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this file, should only have families and domains. Anything else indicates a misconstucted qualifer (usually no 'type' preix
https://curation.pombase.org/dumps/latest_build/logs/log.2017-01-22-00-11…
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[https://github.com/sorgerlab/bioentities](https://github.com/sorgerlab/bioentities)
The grounding_map.csv file maps strings to identifiers. The first
entry in each row is the text, then the follo…
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Borrelia -> protein families tab -> keyword filter -> "ase" -> heatmap
shows bright yellow color for cells with only one member.
Now, reset filter using left panel.
Notice the color of the cells…
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A number of fission yeast proteins have acquired a KW mapping to "cell cycle"
Although these do display cell cycle defects this phenotype is due to a splicing defect and is indirect. We would not now…
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We currently have inconsistent BEL namespaces in the different files we use.
For instance, the latest BEL framework uses SFAM as the namespace for protein families and updates the names of some of the…
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Hi
@pgaudet I'm doing some PAINT spot checking before we import.
http://www.pombase.org/spombe/result/SPBC27B12.09c
Is mapping to translation, but its an FAD transporter?
Val
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BEL statements often involve protein families defined in the BEL namespace. Need to map BEL named families to families in the bioentities namespace (where possible) and ground the statements to the ap…