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Hello,
I am trying to load an h5Ad file from scanpy v 1.4.6 to Seurat using Seurat disk. I did the following steps:
1. Convert scanpy to seurat
```
Convert(
source=scanpy_src,
des…
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When I try to use scran.js to read h5ad in `eletron`, the error is as follows:
```JS
ReferenceError: SharedArrayBuffer is not defined
at scran__js.js?v=7e21cf8d:176:44
at Module.initialize…
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Hello, everyone,
I am working om fly model. And I have met a problem when I was doing QC step use function pp.calculate_qc_metrics. I have got this error. Can anyone help me? Thanks. The code as fo…
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**Describe the issue**
Thank you for creating such a wonderful tool! I would like to ask you about the difference between `adata.h5ad` and `cells_x_genes.total.mtx`. I ran `kb count` and used an outp…
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By using besca25 I get the following error in the celltype annotation notebook:
`DEgenes = bc.tl.dge.get_de(adata, clusters, demethod="wilcoxon", topnr=5000, logfc=1, padj=0.05)`
```
--------…
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Hi, I'm very interested in this work thanks for sharing.
I see that the code uses preprocessed h5ad files. I'd be interested to know how these data are produced from the source data e.g. [https://w…
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There's a build error with the h5ad post trying to use the reticulate package. This is causing the site to not render.
I'm not sure what the error is but it might be the header/label that's us…
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Users should be able to programmatically access the same data we surface in our tools, including:
- Cell type descriptions
- Canonical marker genes
- Computational marker genes
**User Quotes**…
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See the comment from @ryan-williams [here](https://github.com/HumanCellAtlas/table-testing/pull/8#issuecomment-404627113):
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I think this is a great addition as it currently stands, but have a…
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**Dear MILOlab**,
when I try to **_convert my adata_sp object to SPATA2_**, some errors occur below
```{r}
spata_object
```
thanks!