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Hi, Thanks for a great R package.
we have used the IG10 method of phyloglm. We are using it to associate (the presence of) orthologous groups of genes (OGs) within a species to the binary trait "cl…
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Hi,
I'm trying to run CTAT pipeline to annotate my variants, with singularity but I'm having this problem:
```
Missing path to CTAT_GENOME_LIB in $CTAT_GENOME_LIB
```
but I actually have the li…
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cc @AngieHinrichs this is likely another misplacement due high convergence in JN.1:
It is displayed in the JN.1.30 tree but it lacks (or has it reverted) G21255T.
Instead it has C27573T
My propos…
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Hi Ruanjie,
Thank you very much for the excellent work in developing Smartdenovo for the genome assembly.
I tried to assemble a mouse genome with Smartdenovo by running it with the command below…
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Hello,
I am looking for some advice on how to run findGSE and how to interpret the data when dealing with heterozygosity and plant genomes.
I summarized the runs on 4 species in this file:
[FindGSE…
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Hi,
I am at a loss. I've been trying for some time to get `BRAKER2` to run (downloaded and installed latest version). I followed the installation instructions at https://github.com/Gaius-Augustus/BRA…
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hello,Thanks for the excellent compression tools, I have some problems using the compression method with the reference genome,
I am compressing the FASTA data, and the reference genome is GRC38,I sam…
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Hello,
Thank you so much for creating this fantastic package!
I used " kegg_pathways_download" to download all kegg pathways. I am confused it says "downloaded 551 records" but in the output data…
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Dear Aldy Team,
I analyzed targeted sequencing data of 100 PGx genes aligned to the hg19 reference genome using both BAM and VCF files in Aldy v4.4 (Python 3.9.7 on Linux 3.10.0-1160.95.1.el7.x86_6…