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Once we have the number of descendant tips stored in the graph (#63), we should implement a size limit for the subtree query.
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Необходимо загрузить на сервер следующие данные:
- Геном гидры (контиги).
- Геном нематостеллы (сборка).
- Данные по секвенированию из SRA (2 набора данных Illumina, 1 454).
Предлагаю все данные хран…
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Hi Chris,
could this term be also
is_a: CL:0000101 ! sensory neuron
or
part_of: UBERON:0001027 ! sensory nerve
And again, restriction of 'mesoderm-derived structure' to Mouse sounds improper
[Ter…
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There are currently lots of taxa that appear alone in argus -- no ancestors or descendant nodes, just one lonely dot. For example, search for Hominidae.
Most nodes close to the root (life) node are i…
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--Hi,
recently i have used convert_models.py script to convert gff3 file to gtf as:
./convert_models.py Strongylocentrotus_purpuratus.gff3 --gtf=GTF
and it returns errors:
Loading gene models from S…
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Koreader starts up on Kobo Aura HD, but it is UPSIDE DOWN, i.e. I have to turn the reader 180 degrees to see the usual FileManager screen. But this would be a cosmetic issue, if not the more serious b…
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Currently there is a different behaviour between methods...
classification.uid returns the species name, classification.colid not.
```
> classification(get_uid('Baetis rhodani'))
Retrieving data for…
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@hdliv, we can add TNRS contexts for microbial groups if you want to define some for me. Note, they _must_ be monophyletic groups in the taxonomy in order for the contexts to make sense. I just need t…
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Hi,
I was able to import the data manually into Phyloseq but for some reason I keep getting this error:
Error in cmdscale(dist, k = k) : 'k' must be in {1, 2, .. n - 1}
```
> physeq
phyloseq-class …
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When trying to "fixNamesFromTrees", we are getting a "PROBLEM CONNECTING TO SERVER" error:
```
PROBLEM CONNECTING TO SERVER
com.sun.jersey.api.client.ClientHandlerException: com.sun.jersey.api.client…