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Are the json files in the Phenotype library supposed to be valid UTF-8?
If not what encoding is used?
``` r
library(PhenotypeLibrary)
listPhenotypes()$cohortId |>
getPlCohortDefinitionSet()…
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@vitoventurieri poderias explicar melhor o que seria isso?
imagino que seja pesquisar na literatura e noticias pra entendermos qual o percentual de assintomáticos, pra usarmos em #10
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From https://github.com/sars-cov-2-variants/lineage-proposals/issues/1650 and https://github.com/sars-cov-2-variants/lineage-proposals/issues/1576
There seems to be a new S:S31F branch that emerges…
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Original KP.5 proposal
Formerly tracked as Branch 63 of https://github.com/sars-cov-2-variants/lineage-proposals/issues/1097
and for FLiRT>Trio branch as Branch 111 of https://github.com/sar…
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1) Vaping illness pneumonia outbreak with exactly exact symptoms started in July 2019, in USA only.
2) Genomic analysis shows that the virus came to Wuhan from somewhere else.
It probably escaped …
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Hi Shenwei,
We are exploring building a database where we can include bacteria and archaea (from GTDB) and viral database from NCBI, while using NCBI style taxonomy but grafting the GTDB taxonomy …
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Defining mutations:
KP.2 > Orf1a:P1803L (C5673T = PLPro_P240L) > C14220T > S:I934V (A24362G) > T931A, G8872A, S:N30K (T21652G)
Query: T931A,C5673T,G8872A
Samples: 7 ( 6 on Gisaid)
Countries: C…
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I'd like to request adding to IDO 'public health infectious disease intervention' as a term for those public health interventions and policy changes that are implemented with the aim of mitigating an …
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I am trying to use the H5Nx barcodes but get a key error.
Commands:
```
freyja variants $i --variants variants/${prefix}.variants --depths depth/${prefix}.depth --ref Freyja-barcodes/H5Nx/2024-…
wilke updated
1 month ago
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There are a few tools out there that detect recombinants that might be worth adding to SARS-CoV-2. These are stolen from a slack thread with the main contributors being Bani Jolly, Wytamma Wirth, and …