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Hello,
Thank you for metaFlye assembly module development and I have two questions about that.
Q1: Why the difference of genome sizes for Zymo Log and Zymo Even is so big ?
I have tested m…
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This file contains the definition of the MAG class, which is basically a subset of the contigs in a metagenome. The issues that I came across are outlined below:
1. [x] The name of the script and t…
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Hello,
I conducted my metagenomics data by using SqueezeMeta and further analyzed the data by using SQMtools.
When I checked the results, I found that there is a huge proportion of unclassified…
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Hi. This may be normal as I'm assembling a fairly large genome (2.2gbase expected, may be as high as 4.4g if the assembly is fully diploid) from Canu-corrected PacBio reads ... but I wondered how lon…
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Hi,
I have an issue during SIGMA execution.
Please help me out this issue.
I am attaching my config file and log files.
Thanks.
[err.tar.gz](https://github.com/CSB5/OPERA-MS/files/2826431…
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Hi, thanks for making this amazing pipeline to run through a whole set of metagenomics analysis tools! I have one question, is it possible to provide an override option for minimap2 to use the "asm20"…
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Hi,
I keep getting the following error when i run SqueezeMeta on a minion metagenomic sample.
`Running jobs. First attempt out of 2.
Starting 'obtovl' concurrent execution on Wed Mar 18 14:25:…
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Hi there,
I have a single library sequenced with nanopore and I am trying to perform a metagenome assembly. I've tried running the command below but I keep getting the following error.
spades.…
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Hi Murat
This is the first time I am using Anvi'o and installed using conda in my laptop which has Linux operation system. ``` anvi-self-test --suite mini ``` works fine.
```
Anvi'o version .…
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Hello,
I have been running squeezemeta for the second time with a slight change in original metatranscriptome fastq samples. I have used coassembly in both cases and run on our local server. Howeve…