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### Description of feature
Update the `/.github/workflows/` files from nf-core/mpxvassembly to polkapox
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My mt7621 router ran into ph1 tained status after a long period of download data.
Following is the log:
```
#dmesg
...
[106420.982549] ------------[ cut here ]------------
[106420.987432] WAR…
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### Description of feature
cellrangerarc is currently not tested as part of the CI workflows.
Once #91 is set-up, we should add a testcase for cellranger-arc.
Some testdata should be readily ava…
grst updated
9 months ago
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We're seeing some fragmentation on workflows due to switches in technologies (PacBio, Shoreline, Loop, etc) that a migration to DSL2 would help tremendously. This is a simple tracker to plot a course…
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master HEAD build
```
[37947.153634] CPU 0 Unable to handle kernel paging request at virtual address 0000000c, epc == 80088620, ra == 8008936c
[37947.164253] Oops[#1]:
[37947.166525] CPU: 0 PID:…
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Add a pre-commit hook config to project. Useful to have linters for preventing new bugs in the auxiliary scripts.
Suggestions:
* python: black, isort, flake8
* perl: perltidy ?
Anything els…
alkc updated
8 months ago
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TODO:
Issues:
- Installing subworkflows with tools:
Get a list of modules that need to be installed (how to find them) -> tools needs to install missing modules in pipeline/repo -> install sub…
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### Description of feature
[dRep](https://github.com/MrOlm/drep) takes a set of genomes, with CheckM data, and dereplicates them to produce a set of non-overlapping genomes at a specified ANI. As t…
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### System information
Type | Version/Name
--- | ---
Distribution Name | Gentoo
Distribution Version | Gentoo
Kernel Version | 6.5.9-gentoo-dist
Architecture | x86_64
OpenZFS Version | zfs-2.2…
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### Description of feature
The early steps in the pipeline run multiple samples in parallel (e.g., if there is 10 samples, fastqc gets run 10 times). This is the normal way of doing things in nf-core…