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When Using CLI to add stereo and tpers projections, width and height are not found
win 11 PC
Build 1.2.0-0b82fc3
screenshot during processing
![Screenshot 2024-03-05 120433](https://github.com…
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Please supply the following information:
Short title: Demultiplexing and demuxSNP in scRNASeq
Workshop URL: https://github.com/michaelplynch/demultiplexing-bioc23
Workshop docker image: ghcr.io/m…
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A script which after demultiplexing, counts reads per sample and makes a heatmap of reads per well of each input plate.
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_For now, this is a placeholder issue to be filled in by someone closer to the implementation details._
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Hi
I observe a small discrepancy in documentation
The tool description says, that `-i` option require either a single fastq file or a directory. But when I provide directory path containing mult…
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Hi,
Is there any way to directly demultiplex pod5 files like how you can with fast5 files?
Im currently converting pod5 > fast5 and then then back to pod5 after demultiplexing fast5.
Thankyo…
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## Description
We are not copying the sample sheet from the run directory to the demux directory. This has not caused any errors so far because we have only tested the command on previously demuxed f…
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Hi,
When I run:
`lotus2 -taxOnly OTUs.fasta -o lotustax -refDB KSGP_v1.0.fasta -tax4refDB KSGP_v1.0.tax -taxAligner usearch -ITSx 0 -t 48`
I get:
```
TaxOnly option specified, but not an…
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In https://github.com/AlexsLemonade/scpca-nf/pull/332, I added a stub workflow that can automatically test that workflow logic is sound without requiring a full workflow run.
Currently, the test on…