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Hi I would like to know if Porechop is already integrated into the HERRO algorithm, or if we need to process the reads (e.g., trim, filter) prior to using HERRO.
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this is a problem when some project is already sync'ed to the final destination, as dir already exists, it breaks the snakemake rule
https://github.com/maxplanck-ie/nanoporeReads_dataTransfer/blob/…
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Hello,
I received the following error output when running DNAscent detect:
```DNAscent detect -b Tmet_079_pass_mapped_R_index_filt_header.sorted.bam -r /hg38.chrXYM.fa -i Tmet_079_reads_pass_R.…
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Hi! I am having issues installing the tailfindr in RStudio (version 4.4.0). I've been able to install devtools and rbokeh successfully but when I try to install tailfindr using devtools, I get this er…
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Hi, when I try to run pod5 v0.1.13 to convert .fast5 to .pod5, there is an error:
An…
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This is the full log of the f5c call-methylation:
This is dorado basecaller's order：
dor…
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Hi,
I am back for another question, since I got such excellent help last time :)
I am analysing the methylation of my Cytosines and trying to decide on a threshold. I am working with a species o…
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I'm running clair3 with the --use_whatshap_for_final_output_haplotagging option (see clair3 command at bottom) on a 1.1TB bam generated on the ONT platform (basecalling and alignment with dorado/minim…
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Is it the final set of weights, as determined by highest number?
Need to get a bonito model exported to dorado for speed.