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Hii Robert
I have a new MacBook Pro with following specifications
Chip Apple M3 Max
Memory 36GB
macOS Sonoma 14.1
I was trying to test the Bactopia using docker…
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Hi
This is not a bug, but a question.
I'm in the search for a software that can help me build a HMM that can identify imprinted regions using data produced with dorado and modkit from Oxford Nan…
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Hello,
We're currently testing nanopore runs from our GridION. However, the live basecalling software guppy does not seem to support demultiplexing at the moment. As such I wanted to give Porechop …
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### Description of feature
We can try to setup the workflow to validate input sample sheet using a new plugin from the nf-core community
https://nextflow-io.github.io/nf-validation/
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# Feature being added - Filtering!
Filter reads and alignments based on a flexible "mini language" specified in the TOML.
Would go into config TOML under the respective place for the filtering? I.e…
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Hello, I hope you are well!
I'm able to download a specific NCBI Assembly via `bactopia --accession [accession]` -- is there a way to do so with a list of NCBI Assembly accessions (i.e bactopia --…
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Hi there,
I would like to use try this interesting software.
I tried to install it using anaconda. I followed the instructions on the github page but, after typing
>>h5c++ -03 -std=c++11 [...]…
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Hi,
I have 28 samples of feces and slurry (nanopore sequences) and I am trying to work with SQM using my raw reads (sqm_longreads.pl). The problem bigan with the second sample and it gives me this …
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hi, I recently installed funannotate software, and an error was reported during testing.
(funannotate) [liuyuanchao@login ~]$ funannotate check --show-versions
------------------------------------…
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Hi,
I got Nanopore full-length transcriptome data from a **PromethION 2 Solo** machine.
For the library preparation, we used the **Native Barcoding Kit 24 V14 (SQK-NBD114.24)**.
**Can I use …