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I followed the tutorial 'https://github.com/hakyimlab/MetaXcan/wiki/Tutorial:-GTEx-v8-MASH-models-integration-with-a-Coronary-Artery-Disease-GWAS' and it run successfully. About 92 % of model's snps u…
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**In this Phenotype page: impaired glucose tolerance**
https://www.mousephenotype.org/data/phenotypes/MP:0005293
**In the phenotype page we see**:
- 65 significant genes
- Total number of sign…
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Hello,
My current project aims at weighting GWAS snp effects for trait1 with GWAS snp effects from trait2. The LDSC rg genetic correlations is about 0.1. In my scenario, do you think it's ok for usi…
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I didn't do these (it's another 55!) would need to do all the singles, create the doubles and then do the phenotypes. This one can wait for the spreadsheet format...
The session is already quite unwi…
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Hi,
Great paper and package. Thanks alot for making the code open source. I am trying to simulate the dataset for benchmarking cell-cell interaction tools following the Figure 1 f,g,h of the paper.…
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The term 'embryo' has very different meanings in different species. We currently use embryo phenotype to cover all of the prenatal period. The definition I created for embryo phenotype reflects this b…
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Journal Club today we read an eLife paper that describes a different growth phase for Streptomyces. Not sure if this is represented in OMP.
https://elifesciences.org/content/6/e21738
> Here, we…
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Added one table so far with unique codings for sex and race.
Column (variable) names also unique
The table so far search_cloud.cshcodeathon.organoid_profiling_pc_subject_phenotypes_gru
Aiming for…
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A big takehome in the recent UX efforts has been that people often don't wait for autocomplete. Moreover, autocomplete is not well suited to hunter-pecker typists. Thus (in addition to improving perfo…