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### Operating System
macOS
### Other Linux
Ubuntu 20.04
### Workflow Version
v0.3.1
### Workflow Execution
EPI2ME cloud agent
### EPI2ME Version
v0.3.1
### CLI command run
I am running the…
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Hi,
I have installed ccmetagen in a conda environment this week with all its dependencies and run it with
kma -ipe ss1_R1.fastq.gz ss1_R2.fastq.gz -o ss1_R1.fastq.gz -t_db refseq_bf/refseq_bf …
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It would be nice if Vamb could automatically adjust the contig size cutoff, based on the characteristics on the input data.
To do this, we need to:
- [x] Determine the optimum size cutoff for short …
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Thanks for creating and maintaining dnaapler! It's running fantastically well. I had a feature request:
**Is your feature request related to a problem? Please describe.**
I am running `dnaapler al…
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It'd be real neat to have a scraper for Addgene plasmids to put them all into a database. Ideally, this would go through each plasmid and convert the HTML to a relevant JSON file. We'd need a few leve…
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Hi Team,
I have noticed a few observations which are given below. Please look into the below and do the needful.
Reference Links:-
**Main:-** https://main--aldevron--hlxsites.hlx.page/catalog…
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I ran antiSMASH on 15.5k RefSeq representative assemblies, and all but 35 ran successfully (great!). 34 of the errors gave the message "inconsistent exon ordering for features". A manual inspection of…
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# User story
As a user, I want the genome_name in injection materials from TARS. Get a response from molecular registry.
# Acceptance criteria
- [x] Given plasmid_name from ViralPrepLot response, que…
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### Problem Description
When running rotary on specific FASTQ files, I get the following error:
```
WorkflowError in rule stitch_medaka in file /home/lee_bergstrand/rnd/rotary/rotary/rules/./p…
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Hi
I would like to ask the proper threshold to define the plasmid, virus, and chromosme?
Thank you !