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Hey,
I have been working on metagenomic data that comprises yeast and bacteria in the microbiome . We did a WGS on our samples in Illumina platform. From the sequencing results, I'm able to resolve…
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Hi there,
Thanks for this great container, very helpful.
However, I have some troubles at species and pathovars level.
1) I need primers for a particular bacterial species. There are 14 genomes a…
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Dear developers,
I have been checking the code as I wonder if there would be a possibility to generate the same analysis if provided a draft genome or assembly into multiple contigs, in genbank for…
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Hi,
I executed the below command to download Centrifuge database:
centrifuge-download -o library -m -d "archaea,bacteria,viral" refseq > seqid2taxid.map
The command is running from last 7 days.
…
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- in the previous analysis, only minikraken database was used for computational purpose
- however, for the accuracy of the evaluation, both **standard database for kraken2** and a **custom database b…
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Hi,
I'm running make p_compressed, but I think it may be stuck? I modified the make file to use 12 threads instead of one (which was taking forever), but it's been stuck here for nearly two hours.…
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Does Dfast identify pseudogenes?
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### Operating System
Windows 10
### Other Linux
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### Workflow Version
v1.2.0
### Workflow Execution
EPI2ME Desktop application
### EPI2ME Version
_No response_
### CLI command run
_No resp…
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I have been trying to assemble a 10Mb genome with uncorrected nanopore data (3-4 chromosomes expected). We have a lot of data, is that the reason Flye fails at the end?
[2019-06-22 11:00:05] INFO: …
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Will this ever support GATK 4.x ?