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VCV (variation in ClinVar) is a new variant-centric XML schema. More at https://pubmed.ncbi.nlm.nih.gov/31777943
MyVariant.info current imports data from ClinVar's original `ClinVarFullRelease_*.xm…
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Hi I try to run filter_vep but I got an error
my command is :
```
cd NAS/InfoGene/Rachele/data/VEP_output/
mkdir -p filtered_for_predpathogenic
for chr in {1..22}; do
filter_vep …
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Dear Sir
Now I am working project to search a lot of variant data in Clinvar which is time consuming because it seem that Clinvar limit 20 queries per search.
For example
I want to get 2 specific v…
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### Submitter Name
Grace Pendlebury
### Submitter Affiliation
Shariant / Australian Genomics
### Submitter Github Handle
_No response_
### Additional Submitter Details
Shariant is…
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Can we update to the latest ClinVar version? We have a group that just had a ton of new curations added and I would like to use the latest version to include those. Also, is there a way to set up a …
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* Generate 100/1k/10k random HGVS from ClinVar
* Install SeqRepo locally
* Benchmark how long it takes with JSON and REST client - check out caching/non caching etc
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Caching VEP annotations (instead of re-running VEP on all variants each time) would speed up the ClinVar pipeline. This would be nice for updating ClinVar data more frequently.
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Al - Do you know if there are any issues with the ClinVar annotations? I just pulled up proband .....52 in study A259. I had this listed as a stop gain, clinvar variant in SCN8A, but I'm not seeing an…
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Use the ClinVar combiner data stream to provide a continuous, regularly updated flow of VCV data on a separate data stream with the minimal amount of data to support the Baylor VPT (Variant prioritiza…
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