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When I attempt to analyse paired end sequencing files a tiny proportion of the reads merge:
I have checked that flash gives out the correct output in the troubleshooting section "SIQ does not wor…
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My project will analyze _Salmonella enterica_ subsp. _enterica_ serovar _Enteritidis_ (_S. enteritidis_) genomes from a variety of international locations. I think the paper given below would be a goo…
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**Describe the bug**
I am trying to align CRISPR-edited genomic amplicons to my amplicon reference template. When I align these amplicons to its reference using minimap2, I get 10,000+ reads aligning…
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* pharokka version: 1.5.1
* Python version: 3.9.18
* Operating System: Ubuntu
### Description
Hi again @gbouras13 , this is not a bug report, just some suggestions. I have been trying and stu…
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I am trying to annotate multiple genomes and used bakta since I already used this tool before and it worked well and gave out the best results compared to other tools. However, I have been encounter…
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Hey @shntnu, @ashah03 was running an analysis with jump_portrait and found a compound with no plate metadata (JCP2022_088778). I checked that it is not portrait by manually grepping the csv.gz files.
…
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**Describe the bug**
There is no png or pdf file generated for the allele frequency table. I do get the .zip archive containing the allele frequency table in .txt format, but no graphic. Usually cris…
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貼吧活動:(請查閱 [SARS-CoV-2 Timeline by 2020.02.21](https://github.com/agorahub/_meta/blob/agoran/theagora/sari/Memorandum_2020-02-21_SARS-CoV-2-Timeline_Nathan.pdf?raw=true), by Nathan :cloud: )
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Hi, I'm trying to use the public data as mentioned in the supplementary file: H3K27ac-ChIP: ENCFF384ZZM and DHS: wgEncodeUwDnaseK562AlnRep1.bam, wgEncodeUwDnaseK562AlnRep2.bam. And I also change the r…
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https://mp.weixin.qq.com/s/sHd6iz5JenKJV64pbMDxaA
ixxmu updated
3 months ago