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Hi Tao,
We have a submission for Will Greenleaf’s lab that I worked on for a while now. It’s a bit more complicated and I was wondering if we could have a call this week and we go through the sprea…
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### Description of feature
Update the [README](https://github.com/cidgoh/nf-seqqc/blob/dev/README.md)
- [ ] Write the usage instructions
- [ ] instructions for the required databases (if any)
-…
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(Anne) RAB30-NAT14
Decided not to pursue bc it was in Evotec’s hit list before doing much normalization
Emailed Evoted Nov 20. 2023 for permission to share w others
No papers with both genes men…
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We have multiple datasets that we need to prepare:
# multimodal single-cell CRISPR screens:
- [ ] https://nature.com/articles/s41588-021-00779-1
- [ ] https://www.nature.com/articles/s4…
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My project will analyze _Salmonella enterica_ subsp. _enterica_ serovar _Enteritidis_ (_S. enteritidis_) genomes from a variety of international locations. I think the paper given below would be a goo…
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In the mixscape vignette, `eccite$NT` is not present in the Seurat object metadata table. Is there a typo?
# Calculate percentage of KO cells for all target gene classes.
`df
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https://mp.weixin.qq.com/s/QXZgq-kefkiX1GwtKxvIUw
ixxmu updated
6 months ago
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I am trying to annotate multiple genomes and used bakta since I already used this tool before and it worked well and gave out the best results compared to other tools. However, I have been encounter…
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Hi Tim,
I downloaded the processed import-gasperini-2019-v2 data from the [dropbox link](https://www.dropbox.com/sh/jekmk1v4mr4kj3b/AAAhznGqk-TIZKhW40xiU6ORa?dl=0) you shared in [sceptre2-manuscript…
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**Describe the bug**
There is no png or pdf file generated for the allele frequency table. I do get the .zip archive containing the allele frequency table in .txt format, but no graphic. Usually cris…