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## Description:
### Goals:
To provide a pairwise sequence alignment algorithm with lower time and memory complexity.
### Problem to solve:
Current sequence alignment algorithms don't scale w…
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Hey all!
As a part of my thesis I am doing research on spark-rapids, comparing GPU and CPU processing on biological sequencing, essentially constructing De Bruijn Graphs from a large text file. The…
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Hello,
I ran SPAdes assemblies and, before binning with MaxBin2, I renamed the assembly contigs with simple deflines (eg >c_0000001, >c_0000002, etc.). All the bins thus have the new simpler contig…
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Hello @jermp: thank you for designing this awesome data structure! We at @COMBINE-lab (tag: @rob-p) are finding SSHash very useful.
We are interested in using SSHash from within C++ codes, and were…
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Hello,
I successfully ran verkko under local mode on one Arabidopsis sample but failed on another sample. My versions:
```
$ verkko --version
bioconda verkko bioconda 1.0
$ MBG --version
M…
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@rmatthes has introduced a dependency of package CategoryTheory on (some files of) the package Bicategories.
While I agree that it is conceptually undesirable to separate the two, this dependency m…
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In GitLab by @nonnominandus on Feb 10, 2021, 18:29
It has been decided that the de bruijn graph assembler is not useful anymore. The original goal of this piece was to extend existing matches but it …
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An implementation in the igraph C library is being developed. Once this can be called in https://github.com/igraph/r-igraph then this version can be used instead of calling https://github.com/vtraag/l…
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Hi @VPetukhov @evanbiederstedt
### When creating a conos object the session crashes at:
```
Performing P2 processing...
12360 cells, 25732 genes; normalizing ...
Using plain model
Winsorizin…
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When I wanted to evaluate how much space is occupied by the BOSS representation as implemented in Themisto, the following simple test failed: I build the index from a FASTA file and then from two copi…