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Dear all,
I have been having the following issue when installing panX. I followed the steps as in the site and used miniconda as indicated.
`Traceback (most recent call last):
File "./panX.py…
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I find that the "Number of blastp hits with different percentage identity" presented in p.5 of the output file Rplots.pdf could be a simple useful tool to estimate the blastp threshold to use to consi…
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not sure if this is baked in already, but when running many samples from the same experiment, it would be nice if the same species/strain genome representative was prioritized for each sample in the s…
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Reading in vcfs from variant callers that run on long-read bams is only part of the problem. MAVIS still needs bam files for most operations. Such bams have a few key differences from short-read ("NGS…
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```
exp_mtx1
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Good night!
I am having troubles in understanding at which moment I should demultiplex my samples.
As I could understand the script python demux_by_barcode_groups.py requires the “collapse_isoforms…
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Dear Dr. Hajk-Georg Drost
Recently, I used one of your programs named "LTRpred".
I keep getting this error in the Join solo LTR Copy Number Estimation table after Finished LTR CNV estimation…
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Dear Milan -
Thank you for Dsuite, a very useful tool! I recently got a result with signficant clustering by the KS-homoplasy test but non-significant D-statistic. Is this expected? The bioRxiv pre…
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Hello,
After collecting a test set of fragCounter coverage profiles for 4 normal samples, I attempted to run the `dryclean` workflow.
I encountered the following error while trying the first step …
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Hello
I am teaching myself how to run panX using TestSet. Here is the command I run exactly following the instructions.
./panX.py -fn data/TestSet/ -sl TestSet -t 32 > TestSet.log 2> TestSet.err
…