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Hi Vadim,
I am doing limited-proteolysis in proteome. As I use MaxQuant to analyse DDA data, I select semi-specific as digestion type and it will run well with this option. Because I find low amoun…
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Hi @lucidrains , thanks for your awesome work! I used your causal conv implementation and trained on a video vqgan network. The results are as follows:
Original clip sequence:
![36500_image](https:…
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Dear Fragpipe team,
I have encountered an issue with the LFQ-MBR workflow. To start with, I converted my (.mgf) files into mzML with MSconvert and ran the default LFQ-MBR workflow (DDA datatype). I…
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After an initial evaluation of Sage I'm now working on a more complete integration with our internal TMT pipeline. I was wondering if you had any plans to extend your quantification support for labele…
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- [ ] [Correlated gene modules uncovered by high-precision single-cell transcriptomics](https://www.pnas.org/doi/abs/10.1073/pnas.2206938119)
- [x] [Dynamics of single-cell protein covariation during…
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Hi,
Many ppl use Perseus as down stream of MQ.
One of the nice things in MQ is that the output tables populate automatically the correct table upload (e.g. main, numerical, etc.).
Can metamorphou…
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When using DIA-NN to analyze multiple DIA mass spectrometry data simultaneously, how should the parameters be configured for data normalization?
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I am new to fragpipe and want to analyze global and phosphoproteome data for WT and Knock out cell line. I have DDA-LFQ data. I am not sure how to set up the experiment.
- Should I analyze phospho W…
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在我的分子模拟系统中,有很多粒子。每5个粒子构成一个棒(组)。在某一帧数据(即一次dump)中,我想要计算,任意两棒(组)之间粒子的距离。应该怎么做? 具体问题有:
1. 不知道如何预处理数据。
2. 不知道在做循环的时候如何排除自身组。
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I am new to analyzing mass spectrometry data, so for my first experiment (an IP experiment with trypsin digestion), we let our mass spec core facility (the experts) run MaxQuant on the raw data for us…