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Hi,
I've been using SPAdes for a while now, and have successfully been able to generate massive co-assemblies using metagenomic data and have never had any major issues, until now. I've been trying t…
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Hi,
I want to share a new way to apply SpiecEasi and gather any input or critiques from the community.
I’m working with two datasets collected at the same time point:
1. A profile of 20 mucosa…
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Hello, when I use metagenomic data from ruminant to generate jsdel files, most of the files only have "{}", which is empty. Can this be a database issue, as I know SGVFinder's default database should …
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Dear QMD development team,
I want to use the method to analyse my metagenomic and 16S data, respectively. But I am not sure that it only works on the 16S?
Best,
Bing
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Continuing discussion from here:
https://github.com/hyattpd/Prodigal/issues/31
Current proposal:
* User can specify a single genetic code.
* The genetic codes will be obtained from https://ftp.n…
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Hi, if my metagenomic paired-end sequencing strategy is 2*150bp, should the LibrarySize in meta-data.txt be 150 or 300? I found that 150 or 300 will result in different 16S sequence numbers.
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I was hoping to use your model on metagenomics data, but I did'nt want to train it from scratch but rather use the exact same model you generated in your study. I noticed the sharepoint link associate…
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Hello.
I am using version 3.2.4.
I have about 900 sets of bipartite macro genomic data all reporting the following message when running stage_two:
"No target sequence detected in file , no further …
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Hello! Thanks for this interesting tool, I have installed this tools through Miniconda and I just ran 1 metagenomics sample set (paired end fastq) in "metafast_wf" mode in which I have the next messag…
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### Contact details
kiledal@umich.edu
### Dataset Title
Lake Erie Harmful Algal bloom associated communities
### Describe your dataset and any specific challenges or blockers you have or anticipat…