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@rjansen1984 (and others) als je hier lijst met tools kunt opschrijven die we graag in Galaxy zouden willen zien?
- [x] Canu (conda: yes, [github repo](https://github.com/marbl/canu), [readthedoc…
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I wonder if the use of Nanopolish after a canu assembly processed on duplex reads is still of interest in your opinion? If yes, is it possible ?
Thanks Jared for your answer and your work in this t…
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Hi,
I know Nanopolish can output both tsv and modified bam when calling methylation but I wondered if you had (or knew of any) available scripts that would convert modified bam files into the Nanop…
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Hello,
I've looked through each of the previous issues with this same error and haven't been able to find a solution that will work for me. I'm trying to polish my assembly (produce by Flye/metaFly…
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Hej,
I have tried to download the data from the tutorial and is giving me an error:
> wget http://s3.climb.ac.uk/nanopolish_tutorial/methylation_example.tar.gz
> --2023-05-25 01:39:46-- http:/…
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Hi! I am trying to use MXE to cross-compile [nanopolish](https://github.com/jts/nanopolish). Compilation is straightforward with the native toolchain, but with MXE it fails with the following error:
…
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**Describe the bug**
Hi, I've been trying to run SampComp on 6 samples of ONT Direct RNA-seq on a METTL3 KD cell line for some time, and have yet to get past the "parse transcript" step. I have 512G…
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Here the NanoGalaxy wrapper issues and improvement potentials will be listed.
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I've been hearing questions from people who would like to use the new [NEB VarSkip primer scheme](https://github.com/nebiolabs/VarSkip) with this workflow.
I can get things working if I suggest tha…
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Dear Xpore developers,
Thank you for the software. It was easy to install and handle , until I decided to merge all 50+ .fastq (and .bam) output files from one nanopore run. Each .fastq roughly h…