-
> callfusion(CaseBam='/data/NGS/Ctdna-Data-Analysis/106.DataAnalysis/20200401_H33JCDSXY-P101SC18120363-01/analysis2/intermediate_bam/HO0327-GW9T0137B05_L2.raw_data_mapped.bam',TestI
D='GW9T0137B05',O…
-
Hello,
is this repo still active?
I found some problems building the docker:
## Problem1 (probably solved) : Package python-software-properties not available
```
$ git clone https://github…
-
Hello, our server recently update R from 3.0.2 to 3.2.0
and a new error occur,
I have installed shortread but I can't run the software anyway.
#
Welcome at Thu Nov 12 14:36:05 2015
Configuring vari…
-
Hi, all,
I am following the [Workflow for Microbiome Data Analysis](https://bioconductor.org/help/course-materials/2017/BioC2017/Day1/Workshops/Microbiome/MicrobiomeWorkflowII.html) dealing with IT…
-
Hi,
How can we modify the replot.R code to be able to plot only top 1000 rows in the heatmap ?
Thanks!
-
Hi Alex,
Thank you so much for all of the resources you've provided to the community.
I'm working with PE150 bulk RNAseq data. My library adds an 8nt UMI to read2. I first extracted the UMIs fro…
-
Project: 2520
Position: 284-285
Looks like there should be an A inserted between those two positions
/media/VD_Research/TMPDIR/2520_Projects/A12x2520_Houston_Mesoni
@InaMBerry
-
**Version info**
- bcbio version (`bcbio_nextgen.py --version`): 1.2.9
- OS name and version (`lsb_release -ds`): "CentOS Linux release 7.9.2009 (Core)"
- Manta: 1.6.0
- fgbio: 1.4.0
**To Repro…
-
Looking at options for different formats:
[Previous version](https://khmer-protocols.readthedocs.io/en/ctb/mrnaseq/7-expression-analysis.html) of eel pond used RSEM, which basically allowed the use…
-
Hi all, I got an interesting and unexpected error.
Unfortunately, I can not retrieve the bam file to see what it is about:
```bash
samtools sort: failed to read header from "-"
```
the log:
```b…