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## We have multiple _potential_ use cases for recording causal relationships between phenotypes:
* Defining phenotypes that specify aetiology - e.g. hemolytic anemia MP:0001585 DEF: deficiency of …
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we currently only import the "abnormal" phenotypes, but we also need to bring in the "normal" ones.
we also need to set up a general model for these kinds of statements.
@cmungall please comment on…
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we need to be able to use the EFO traits/phenotypes.
for example coming from measurements: http://www.ebi.ac.uk/efo/EFO_0004611
or 'abnormality of the cardiovascular system': http://www.ebi.ac.uk/efo…
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Hi, RVTESTS allow "--covar-name cov1,cov2,cov3", but I found that I could not use "--pheno-name trait1,trait2,trait3". It gave me an ERROR : cannot locate phenotype header [trait1,trait2,trai3].
…
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Hi everyone,
I am working with two datasets, one European and one Asian, and have successfully calculated LD scores. I have a total of 21 phenotypes. For most phenotypes, the meta-analysis ran succ…
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### Branch
g4.58-Phenoshare-Values-Validator
### Groups
Group 4 - API | Services | Plugins
### Describe
Focuses on validating values in a data file submitted to Tripal Cultivate Phenoty…
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ncbi, resfinder, card all use diff names
maybe use 3 letter codes? like FUS, KAN, VAN etc
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In addition to the two existing cases (digenic and self-referential) that are flagged in the "review.tsv" file, another case of "somatic" is needed. These should be any entry that contain the word "so…
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I am interested in using ATHENA to analyze tumor heterogeneity. I have data generated from the Xenium platform, and I was wondering if ATHENA supports this type of data.
Could you please confirm if…
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Hi Florian, thank you for a great package! I think it would be very useful if `snp_simuPheno` could be extended to simulate multiple genetically correlated phenotypes. I guess the framework could be m…