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I'm trying to prepare the genotyping data from a multiparental MAGIC population by applying the described format 123 for AA, AB, BB. I have a PED file with PLINK genotyping format 0 1, where 0 stands …
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Hi,
I started to use vcfdist recently to evaluate some small variant calls from dual assemblies I have generated and it has been going well so far, thanks for the great work :) I have a few questio…
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Dear developer,
Thank you for providing this wonderful tool! I am wondering about the compatibility of individual-level gVCF files obtained through GATK4 with DeepVariant for joint calling of multi…
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Dear @joellembatchou ,
I have read the FAQs and #271 and understand that step1 aims to capture genome-wide polygenic effects. I would like a bit more advice in performing rare variant associa…
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| Column Header | Description | Format …
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dill version 0.3.7
centos stream
python 3.10.4
I've run into a situation where the standard library pickle is successful in serializing an object, but dill has a bug.
```
In [7]: dill.loads(di…
xzy3 updated
7 months ago
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Hi,
I have been using the very useful package moimix lately, but I was running into the issue below using alleleCounts, which could be helpful to report.
Here was the error message I got from a…
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Hello, hope all is well. I haven noticed that the -n and --cn-neutral-region commands do not update my neutral region. Is there a way I can provide an updated neutral region to the algorithm?
Examp…
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![image](https://github.com/vgteam/vg/assets/74750242/a9376313-7747-4be2-997a-6f70c557f3de)
The `toil-vg sveval` can evaluate the SV calls relative to a truth set. Is there a corresponding comman…
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Expected Behavior
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For Bugs:
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### Environment
#### Steps to Reproduce