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Hi,
I am interested in running COSMOS with transcriptomics and phosphoproteomics data and I was wondering about the following:
1 - In the original use case of COSMOS, the PKN required a specific f…
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PXD015578 :
conflicting label/column: 'comment.Proteomics.Data.Acquisition.Method.' should be corrected to 'comment.proteomics.data.acquisition.method.'
wraff updated
2 years ago
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Thank you for providing with MALDIquant. I have peptide MALDI-TOF MS data collected in reflectron mode. My data are in .mzML format. I am unable to plot or process the data using MALDIquant. I am usin…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/veitveit/vsclust
Confirm the following by editing…
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Dear MSFragger team,
We have been using your software for a while now and popularity is growing, so thank you for the awesome work! I would also like to congratulate you on winning the recent #ALSM…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/mooredf22/protlocassigndoc
Confirm the following …
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Dear Gabriel,
Do you see a reason why not using the dream function on proteomics abundance data, or particular issues? Input to dream() here would be a simple matrix of normalized intensities rathe…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/odisce/phenomis
Confirm the following by editing …
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**Describe the bug**
Hello,
I'm trying to generate a spectral library from Thermo DDA runs. I'm running FragPipe in headless mode in Linux with a workflow copied from the GUI to include spectral l…
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Our proteomics processing pipeline provides normalized expression matrices summarized at the gene level; so genes in rows, samples in columns, and normalized intensities as values (intensities, not sp…
prvst updated
2 years ago