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The current advice from ONT regarding how to perform duplex basecalling is here:
https://community.nanoporetech.com/posts/guppy-v6-0-0-release (dated 6th December 2021 - login required to view)
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Hello,
I am using pymethyl-process to process IDAT files in the hope of extracting the beta values from multiple samples. Currently I am running it as such:
```
pymethyl-preprocess preprocess_…
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### Contact Details
_No response_
### Description of changes
[workbook-3.xlsx](https://github.com/ranchobiosciences/Data_Modeling_Issues_Templates/files/10725594/workbook-3.xlsx)
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We would like to tag classes with meta categories, both to make it easier to test certain assumptions (e.g. no diseases should be both defined to be caused by different genes and be in a subsumption r…
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Dear author, when I run the easyfuse tool, soapfuse always terminates. Can I exclude the soapfuse tool and run fetchdata and summarize?
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(XICRA) [mbansal@login004 teton1]$ XICRA prep -i ./teton1/ -o ./XICRA_Prep/ --debug
######################################################################
# XICRA pipel…
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Hi,
I am trying to use RSEM to estimate the expression of transcripts assembled by Trinity. I am using the Trinity's align_and_estimate_abundance.pl script. The script fails at the convert-sam-for-…
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Hi, I am trying to run cgpwgs within docker on my own data. Here is my code:
```
export CGPWGS_VERSION=2.1.1
docker run --rm \
-w myworkpath/Project \
-v myworkpath/:myworkpath/ \
-v myw…
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Hello @pimentel @roryk @ttriche @jdidion @vals ,
I used Kallisto and I am now implementing Sleuth. Unfortunately, I am yielding zero differentially expressed genes (DEGs). This output cannot be corre…
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Hi!
Thank you for maintaining this great workflow!
I've run into java problems after a fresh install of v1.2.9, see traceback below
```
Traceback (most recent call last):
File "/home/bcb…