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Hello again!
I have been thinking about how to increase the number and improve the quality of reconstructed MAGs, and I wanted to get your thoughts on a particular approach that I read in some bioi…
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I've downloaded some metagenomes from SRA and mapping to MAGs. I'm getting an error that %nan reads were filtered because there aren't paired end reads. I'm mapping with bowtie2 and from the log it ap…
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Hi,
I am running assembly on metagenomes on a CentOS with Slurm and I was having heap space errors from Java. In the main config.yaml, mem is configured to 80Gb, and I preferred not to increase all…
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I have data from a single water sample that was filtered through a big filter followed by a small filter to capture attached vs. free-living microbes. We assembled the sequences from both sets of filt…
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Hi,
Thanks for this nice tool!
I wonder if it would work with environmental metagenomes?
Cheers,
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I found a set of 31 ancient dental calculus metagenomes on NCBI/ENA, released in 2016, for which I can't find a publication.
Has anyone seen a publication for PRJEB12831, from the study by Camilla…
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Hello,
I had a question about filtering the genome wide compare tsv file. I am comparing highly similar metagenomes and I am getting very low percent_compared (
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I am trying to simulate metagenomes with a certain number of genomes from specific distributions. However, the number of reads per genome is not the same at all as the distribution file given to CAMIS…
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```
-- canu 2.1.1
--
-- CITATIONS
--
-- For assemblies of PacBio HiFi reads:
-- Nurk S, Walenz BP, Rhiea A, Vollger MR, Logsdon GA, Grothe R, Miga KH, Eichler EE, Phillippy AM, Koren S.
-- …
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this might simplify the catlas a lot.