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Hi,
I want to do some end-to-end training using your sw_cuda modual. But it seems that I don't how it works. My code:
``` python
from deepblast.sw_cuda import SmithWatermanDecoder
device = torch…
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Hi!
I recently ran funannotate compare with 14 genomes and it generated ~3.1mil files (and then was killed because our group hit the 15 mil file limit for our cluster allocation).
I'd like to
…
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Hi,
I have a set of already called genes (not from prodigal) that I would like to use as input to inStrain. Is there any easy way to do this? Based on a previous issue (#56 specifically), it appear…
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**Describe the bug**
NM_020451.2:c.827_829dup > NP_065184.2:p.(Val275_Ala276=)
**Expected behavior**
To be confirmed
This is a weird one. Mutalyzer shows 2 alternate descriptions. I have added…
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Hi everyone,
In this project, we have a bunch of experimental data on the binding of small molecules to WDR91. Many of the molecules are in nice matched pairs, in which the molecules differ by a si…
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Hi,
Recently I have installing cat, I think I had installed everthing except little bit wrong with Augustus (I got it from bioconda, version 3.3.2, but I think it cannot config as you said). When I…
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@hsun3163 how the model looks like, and what approximation has been made.
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In the following line of code, it seems that the index of the atom in each residue that is to be used for distogram prediction is also being used as the representative (i.e., token) center atom of eac…
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_The below text was used in an application submitted by @mattodd in Feb 2019 to the [AI3SD](http://www.ai3sd.org/) network for funding. The title was "Predicting the Activity of Drug Candidates when t…
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Hi @ppxasjsm from discussions with @maxkuhn it is also good to clarify
- why the R_mean value from X resampled calculated free energies is always lower than the R value of the original dataset
…