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Hi,
I have been trying to manually select the cutoffs by running "hist_plot.py". As I understand, we are supposed to select cutoff values from the count-read_depth image and manually change the "cuto…
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Hi,
We really would like to test and use your program, but we encounter some problems with installing it. It seems like the same problem that 2tony2 mentioned. So we tried his suggestion and instal…
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# Feature being added - Filtering!
Filter reads and alignments based on a flexible "mini language" specified in the TOML.
Would go into config TOML under the respective place for the filtering? I.e…
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Hi, everybody!
It seems that the subcommand "view" of the command "pod5" does not work for all kind of Nanopore data. See, for example, the following case:
curl -OL 'https://sra-pub-src-1.s3.ama…
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I recently tried your workflow, and found mosdepth was crashing due to a dependency issue. I was able to fix it by providing the versions that you have listed on the Structural variation analysis page…
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When setting the parameters below, do these need to be included in the dentist.json config file? and if so in which section?
--max-insertion-error
--min-anchor-length
--min-reads-per-pile-up
--m…
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Hi everyone,
I have a question regarding the analysis of data derived from modkits. I am working with two sets of data (for the moment, a few samples): one concerning samples sequenced without PCR am…
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Hi there,
I would like to use try this interesting software.
I tried to install it using anaconda. I followed the instructions on the github page but, after typing
>>h5c++ -03 -std=c++11 [...]…
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The current version of Decoil supports three tasks: SV calling using Sniffles1, bigWig track generation using bamCoverage and Decoil reconstruction. I hope to introduce a new command specifically for …
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Hello,
I encountered an error related to the presence of an alternative contig on which Spectre wanted to make the CNV call, whereas I only wanted to make the call on the canonical contigs.
Ev…