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HI,
I wanna use Conpair to evaluate tumor-normal samples from many genes panel sequencing,however,
I am not sure if it's ok ？
genes panels have fewer the number of sites and region le…
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Implement an action that will test basic statistics: Base count, read count, and N50.
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35 concepts (see bellow) seems to have the diplicated definitions. The were identified by the robot report duplicate definition query (slightly altered).
They need to be specified.
http://edamon…
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- **Name:** _Caenorhabditis elegans_ ~
- **Description:** _C. elegans_ is a free-living nematode from _Rhabditida_. One of the model species, here's an amazing online [Wormbook](http://www.wor…
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Hello,
I'm following the epi2meLabs tutorials on SNP using Medaka
The following link is mentioned:
>The workflow used within Medaka to call variants in human whole genome sequencing is outlined in …
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I think it would be good to have a module for ichorCNA, a tool for calling copy number variation in shallow whole genome sequencing data (particularly cell free DNA).
- [X] This module does not exi…
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Hi everyone
I conducted an analysis using Orthofinder in these days. And I found some information in slurm files as follows:
"WARNING: program called by OrthoFinder produced output to stderr
…
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Gubbins recombination tool via galaxy platform viewed on phandango. why is it when i add the annotation file i get half of my data with no recombination result as u can observe?? please help
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Using a local eda backend setup, noticed that in the Resistome-1 study the wgs variables are missing.
Sent: GET request to `http://localhost:8080/studies/Resistome-1` (local subsetting service)
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**Describe the issue**
I am currently running the PureCN 2.3.0 with an input VCF file from Mutect2 (GATK v4.2.6.1), and the job was halted due to an error message below.
**To Reproduce**
Copy and…