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This is likely related to #1703 as it triggers the same underlying weirdness.
The following code reliably core dumps upon exit, suggesting heap corruption. Beyond #1703, I don't have any evidenc…
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Noticed that `readH5AD` will sometimes (maybe always?) emit `dgRMatrix` objects. These are pretty unusual (and useless), we should coerce them into dgCMatrix objects instead.
I notice that the spar…
LTLA updated
7 months ago
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Steps to reproduce:
1. In staging: https://cellxgene.staging.single-cell.czi.technology/wmg-v2
2. Add JUN, JUNB,JUND
3. Download CSV
4. Notice tissue column = cell type column
Cell type column shou…
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# Design
## Schema versioning
The CELLxGENE schema MUST use [Semantic Versioning](https://semver.org/).
**Major version** is incremented when schema updates are incompatible with the AnnData …
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**Preferred term label**
BEST4+ intestinal epithelial cell
**Synonyms** (add reference(s), please)
**Definition** (free text, with reference(s), please. PubMed ID format is PMID:XXXXXX)
An a…
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Test case:
```py
import scanpy.api as sc
import numpy as np
adata = sc.AnnData(X=np.random.binomial(100, .01, (100, 100)))
adata.obs_names = adata.obs_names.astype(str)
# this works fine
adat…
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TODO list:
- [ ] Convert tissueId from the URL from `_` to `:`
- [ ] Update selecting organ state to trigger route change to new URL, so URL becomes the tissueId source of truth
- [ ] Make sure /cell…
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## Describe the bug
The following error occurs when attempting to query for a `SingleCellExperiment` by `dataset_id` using syntax similar towhat is shown in the [Integrating multi-dataset slices of…
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## Describe the bug
Failing Seurat conversion of the dataset with this error:
```Error in h(simpleError(msg, call)) :
error in evaluating the argument \\'x\\' in selecting a method for functio…
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## Describe the bug
The DESCRIPTION file Version: field https://github.com/chanzuckerberg/cellxgene-census/blob/5600fbfde559ceb7d44625e6a47a925cd67d8115/api/r/cellxgene.census/DESCRIPTION#L3 is not…