-
#### What analysis module should be updated and why?
https://github.com/d3b-center/D3b-codes/tree/master/gene_match
1) Move this gene match module to PediatricOpenTargets
2) Change the file pa…
-
Hi, so I ran arriba for both hg38 and hg19; on the hg38 it renders the fusion perfectly and I can see that the fusion is what I would expect for the domains and breakpoints. However on hg19 is a diff…
ahdee updated
2 years ago
-
From this comment, there are a few website references which we should update:
Hi @jashapiro - these changes look good. The Cell format and biorxiv changes look as expected.
I did notice some o…
-
Hi, there
Good AGAT for the analysis for the gtf or gff3 files. I have used the agat_convert_sp_gxf2gxf.pl to add the gene name into the final gffs files ,it works well. After I check the results …
-
#### What data file(s) does this issue pertain to?
JSONL files for MTP:
`gene-level-snv-consensus-annotated-mut-freq.jsonl`
`variant-level-snv-consensus-annotated-mut-freq.jsonl`
`gene-level-cnv…
-
My R Command:
```
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocM…
-
Hi there I'm running ISOFOX and i encountered this warning :
```
21:27:43 - [INFO ] - Isofox version: 1.3
21:27:43 - [INFO ] - running function(s): TRANSCRIPT_COUNTS
21:27:43 - [INFO ] - running f…
-
- [x] Make mouse models
- [x] Pathway boundary question- Would R-HSA-74718 fit better under R-HSA-77387? The internalization isn't really part of the signaling is it? It doesn't connect to anything d…
ukemi updated
2 years ago
-
Thank you for your great work!
I am trying to utilize the scFusion in my scRNA data. However, I found the software was developed under the protocol of smart-seq2. I wonder whether it could be used on…
-
## Done Condition (What do we need? Why do we need it? Keep this is small as possible!)
Frontend approves of a test study with SV data (converted from fusion) displayed in the portal.
Discuss possib…