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Right now the portions of the plasmids that are part of the device are not in order. For some reason, `.add` causes an error when trying to add the same sequence annotation from the original plasmid.
bchan updated
5 years ago
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Rename **Genes/Plasmids** to **Genome Matches**. Incorporate the MLST data to the detailed summary using the following format: Where the highlighted text should be in the form of `ST19 (senterica)`
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Hi,
I'm getting the below error while running SCAPP. Is this something related to the samtools version (v1.6) that I'm using? If so, which exact version should I be using? I was unable to find this…
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I only have nanopore sequence data for agrobacterium tumefaciens whole genome, then I noticed different basecaller guppy version (2.1.3 vs. 3.0.3) combine with different assembly tool (unicycler vs. c…
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Unsure if this was suggested before and also not sure how this would work since it's... y'know the gene is in your blood stream & such but was wondering if this could be an option with a special type …
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https://github.com/ELIFE-ASU/ecg/blob/a07d0c3dc75bfb7a5fb22ba7b001e9f59e913852/ecg/jgi.py#L10
Write the list of all possible arguments at the beginning of description for the script as it is done u…
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Hi
I am getting the following error when vamb is loading RPKM from a jgi depths file. Can you please let me know what the issue is?
(/pylon5/cc5piap/arghyam/vamb) [arghyam@login018 megahit-all-an…
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Hi Mikhail,
I have removed all raw reads shorter than 1kb. However the final polished flye assembly has contig shorter than 0.5kb. To my understanding of Flye algorithm, this shouldn't happen. Are …
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Hi there,
I am running genomescope for a set of bacterial reads, and I get meaningful results. But in what about heterozygosity? Since the organisms I am working with only have one copy of each gene …